NF­DI4­BioD­iversity

Link­ing bio­lo­gical data as part of NF­DI4­Biod­iversity

Forty-nine partners have joined together to form the NFDI4BioDiversity Consortium to improve data availability for environmental analysis and provide practical software tools. The consortium is part of a larger network within the National Research Data Infrastructure (NFDI), which is funded by a 10-year program of the Joint Science Ministerial Conference (GWK). Our role in the consortium is to provide user connectivity to the NFDI4BioDiversity network to exemplify the added value of data availability (TA1-2Involve).

NF­DI4­BioD­iversity Con­sor­tium Web­site

Pub­lic­a­tions

Glöckner FO, Diepenbroek M, Felden J, Overmann J, Güntsch A, Stoye J, Overmann J, Wimmers K, Kostadinov I, Yahyapour R, Müller W, Scholz U, Triebel D, Frenzel M, Gemeinholzer B, Goesmann A, König-Ries B, Bonn A, Seeger B (2020): NFDI4BioDiversity - A Consortium for the National Research Data Infrastructure (NFDI), Zenodo, https://doi.org/10.5281/zenodo.3943645

Miralles A, Bruy T, Wolcott K, Scherz MD, Begerow D, Beszteri B, Bonkowski M, Felden J, Gemeinholzer B, Glaw F, Glöckner FO, Hawlitschek O, Kostadinov I, Nattkemper TW, Printzen C, Renz J, Rybalka N, Stadler M, Weibulat T, Wilke T, Renner SS, Vences M (2020): Repositories for Taxonomic Data: Where We Are and What is Missing. Systematic Biology, 2020 Apr 16. pii: syaa026. https://doi.org/10.1093/sysbio/syaa026

Gemeinholzer B, Vences M, Beszteri B, Bruy T, Felden J, Kostadinov I, Miralles A, Nattkemper TW, Printzen C, Renz J, Rybalka N, Schuster T, Weibulat T, Wilke T, Renner SS (2020): Data storage and data re-use in taxonomy – the need for improved storage and accessibility of data other than DNA sequences. Org Divers Evol 20, 1–8 (2020). https://doi.org/10.1007/s13127-019-00428-w

Glöckner FO, Diepenbroek M, Felden J, Overmann, Bonn A, Gemeinholzer B, Güntsch A, König-Ries B, Bonn A, Seeger B;, Pollex-Krüger A, Fluck, J, Pigeot I, Toralf K, Mühlhaus T, Wolf Ch, Heinrich U, Steinbeck Ch, Koepler O, Stegle O, Weiman, J, Schörner-Sadenius T, Gutt, C, Stahl F, Wagemann K, Schrade T, Schmitt R, Eberl C, Gauterin F, Schultz M, Bernard L (2019): Berlin Declaration on NFDI Cross-Cutting Topics, Zenodo,  https://doi.org/10.5281/zenodo.3457213

Gemeinholzer B, Nieschulze J, Tauch A, Goesmann A (2019): Big Data in der Biologie: kein Problem mehr! Biologie in Unserer Zeit (Biuz),49(1), 58-67.

Droege G, Barker K, Seberg O, Coddington J, Benson E, Berendsohn WG, Bunk B, Butler C, Cawsey EM, Deck J, Döring M, Flemons P, Gemeinholzer B, Güntsch A, Hollowell T, Kelbert P, Kostadinov I, Kottmann R, Lawlor RT, Lyal C, Mackenzie-Dodds J, Meyer C, Mulcahy D, Nussbeck SY, O’Tuama É, Orrell T, Petersen G, Robertson T, Söhngen C, Whitacre J, Wieczorek J, Yilmaz P, Zetzsche H, Zhang Y, Zhou X (2016): The Global Genome Biodiversity Network (GGBN) Data Standard specification. Database, 1–11.

Schmidt B, Gemeinholzer B, Treloar A (2016): Open Data in Global Environmental Research: The Belmont Forum's Open Data Survey. PLOS One, https://doi.org/10.1371/journal.pone.0146695

Allison L, Gurney R, Cesar RM, Gemeinholzer B, Koike T, Mathieu PP, Mokrane M, Nativi S, Peters D, Samors B, Treloar AE, Vilotte JP, Visbeck M, Waldmann C (2015): A place to stand: e-Infrastructures and Data Management for Global Change Research, GEOSS Common Infrastructure: The Discovery and Access Broker (DAB) framework. Belmont Forum e-Infrastructures and Data Management Project, https://doi.org/10.5281/zenodo.34370

Coddington J, Barker K, Droege G, Astrin J, Bartels P, Butler C, Cantrill D, Forest F, Gemeinholzer B, Hobern D, Mackenzie-Dodds J, Ó Tuama É, Petersen G, Sanjur O, Schindel D, Seberg O (2014): GGBN: Making genomic collections discoverable for research through a networked community of biodiversity repositories. IN: DNA Banking for the 21st Century, Publisher: The William L. Brown Center at the Missouri Botanical Garden., Editors: Wendy Applequist, Lisa Campbell, pp.165-168.

Amann J, Braus G, Gemeinholzer B, Häuser C, Jahn R, Lohrmann V, Lüter C, Meyer A, Misof B, Raupach MJ, Renner SS, Roos C, Rossello-Mora R, Schleifer KH, Steinicke H, Suerbaum S, Vences M, Vogel J, Wägele W (2014): Herausforderungen und Chancen der integrativen Taxonomie fuer Forschung und Gesellschaft - Taxonomische Forschung im Zeitalter der -OMICS-Technologien; Challenges and Opportunities of Integrative Taxonomy for Research and Society Taxonomic Research in the Era of -OMICS Technologies, Deutsche Akademie der Naturforscher Leopoldina e.V.

Droege G, Barker K, Astrin JJ, Bartels P, Butler C, Cantrill D, Coddington J, Forest F, Gemeinholzer B, Hobern D, Mackenzie-Dodds J, Tuama E, Petersen G, Sanjur O, Schindel D, Seberg O (2013): The Global Genome Biodiversity Network (GGBN) Data Portal, Nucleic Acids Research.

Marquard E, Dauber J, Doerpinghaus A, Dröschmeister R, Frommer J, Frommolt KH, Gemeinholzer B, Henle K, Hillebrand H, Kleinschmit B, Klotz S, Kraft D, Premke-Krauss M, Römbke J, Vohland K, Wägele W (2013): Biodiversitätsmonitoring in Deutschland: Herausforderungen für Wissenschaft, Politik und Umsetzung, Naturschutz und Landschaft 8(88): 337-341.